
The reason for this stems from the difference between direct versus indirect T-cell stimulation. In the early (e.g. first 3 months) transplant period, donor antigen-presenting cells, typically B-cells, are able to directly stimulate recipient T-cells when the donor MHC itself is recognized as foreign by recipient T-cells. This leds to a robust immune response which is 100x more potent than indirect T-cell stimulation, in which recipient MHC presents processed, donor antigens to recipient T-cells. The late (e.g. after 3 months) immune response is dominated by the indirect immune response since most of the donor B-cells are now dead at this time point, and the indirect immune response is easier to control.
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